UF Research Computing Help & Documentation (link)
Navigate to HiPerGator through OpenOnDemand
To start off, type in your browser:
https://ood.rc.ufl.eduIf this is the first time going to OpenOnDemand in your browser there will be a page re-direct to InCommon.org
From this re-direct website type Florida in the institution and select “University of Florida” from the dropdown menu.
From here you would login with 2-factor authentication as you typically would for Canvas.
After OpenOnDemand successfully loads select the Files dropdown
Select /blue/psy4911
Next, when you are in the correct location you can open a terminal to create a shortcut so that you can always find your blue-folder
Type a symlink command in the terminal:
ln -s /blue/psy4911 blue_psy4911
Confirm that the shortcut was made by typing:
find . -maxdepth l type l -ls
Create a folder for downloading files and examples to your blue drive for learning DeepLabCut
- There are two ways to navigate the blue drive filesystem: OpenOnDemand GUI & Terminal (command line)
- if you’re not sure how to navigate to a directory from the command line go to these links:
- Create a new folder so that you can do DeepLabCut tutorials and examples
- Navigate to your blue drive personal folder “/blue/psy4911/yourname/” then make a folder named try-dlc
- The easiest way to start out in terminal from OOD is to click on the folder that you made
- …then from that location click Open in Terminal
Clone all example material from GitHub to a folder on your Blue Drive
- From the chosen folder on your /blue/psy4911/yourname/ folder install DeepLabCut using the following commands in terminal:
module load condagit clone https://github.com/DeepLabCut/DeepLabCut.git
- Navigate to the new folder /blue/psy4911/yourname/DeepLabCut/ by typing
cd DeepLabCut/deeplabcut - to run from the command line type
module load deeplabcut/2.2.1 - then type
ipython - if you type
?deeplabcuton the command line you can see that everything in DeepLabCut 2.0 is available from the command line - type
exit()to leave ipython
NEXT go to the HiPerGator DeepLabCut Jupyter Notebooks tutorial…
- To Run Napari from the remote GUI on HPG start HiperGator Desktop then open a terminal on the desktop and type:
module spider Naparimodule load napari/0.4.7Napari